MD Expert Analysis

Service Description

Leave the technicalities of molecular dynamics simulation to us at Proinsilico. Our expert analysis of simulation data will save you time and allow you to easily integrate in silico perspective into your research. Let us handle the analysis so you can focus on completing your research without worrying about the complexities of molecular dynamics simulation data. Price charge is for a simulation system (1 protein or 1 protein-ligand complex). Analysis of Molecular Dynamics Simulation =============================== Prepare system for MD simulations using GROMACS up to 100 nanoseconds Perform energy minimization to stabilize molecular structures Conduct equilibration steps for system stabilization Run production MD simulations for data collection Analyze trajectories to study molecular interactions Estimate binding free energies using MMPBSA or MMGBSA methods Create a detailed, publication-ready report summarizing methodology, results, and conclusions including Root Mean Square Deviation (RMSD) Root Mean Square Fluctuation (RMSD) Hydrogen bond (HB) Radius of Gyration (Rg) Solvent Accessible Surface Area (SASA)